Found 55 results
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Journal Article
A. Yambartsev, Perlin, M. A., Kovchegov, Y., Shulzhenko, N., Mine, K. L., Dong, X., and Morgun, A., Unexpected links reflect the noise in networks., Biol Direct, vol. 11, no. 1, p. 52, 2016.
A. Morgun, Dzutsev, A., Dong, X., Greer, R. L., D Sexton, J., Ravel, J., Schuster, M., Hsiao, W., Matzinger, P., and Shulzhenko, N., Uncovering effects of antibiotics on the host and microbiota using transkingdom gene networks., Gut, vol. 64, no. 11, pp. 1732-43, 2015.
R. R. Rodrigues, Shulzhenko, N., and Morgun, A., Transkingdom Networks: A Systems Biology Approach to Identify Causal Members of Host-Microbiota Interactions., Methods Mol Biol, vol. 1849, pp. 227-242, 2018.
K. Chi Lam, Vyshenska, D., Hu, J., Rodrigues, R. Rosario, Nilsen, A., Zielke, R. A., Brown, N. Samuel, Aarnes, E. - K., Sikora, A. E., Shulzhenko, N., Lyng, H., and Morgun, A., Transkingdom network reveals bacterial players associated with cervical cancer gene expression program., PeerJ, vol. 6, p. e5590, 2018.
R. R. Rodrigues, Gurung, M., Li, Z., Garcia-Jaramillo, M., Greer, R., Gaulke, C., Bauchinger, F., You, H., Pederson, J. W., Vasquez-Perez, S., White, K. D., Frink, B., Philmus, B., Jump, D. B., Trinchieri, G., Berry, D., Sharpton, T. J., Dzutsev, A., Morgun, A., and Shulzhenko, N., Transkingdom interactions between Lactobacilli and hepatic mitochondria attenuate western diet-induced diabetes., Nat Commun, vol. 12, no. 1, p. 101, 2021.
S. N. Diniz, Pendeloski, K. P. T., Morgun, A., Chepelev, I., Gerbase-DeLima, M., and Shulzhenko, N., Tissue-specific expression of IL-15RA alternative splicing transcripts and its regulation by DNA methylation., European cytokine network, vol. 21, no. 4, pp. 308-18, 2010.
A. L. Johnson, Aravind, L., Shulzhenko, N., Morgun, A., Choi, S. - Y., Crockford, T. L., Lambe, T., Domaschenz, H., Kucharska, E. M., Zheng, L., Vinuesa, C. G., Lenardo, M. J., Goodnow, C. C., Cornall, R. J., and Schwartz, R. H., Themis is a member of a new metazoan gene family and is required for the completion of thymocyte positive selection., Nature immunology, vol. 10, no. 8, pp. 831-9, 2009.
A. Morgun, Shulzhenko, N., Socorro-Silva, A., Diniz, R. V. Z., Almeida, D. R., and Gerbase-DeLima, M., T cell receptor excision circles (TRECs) in relation to acute cardiac allograft rejection., Journal of clinical immunology, vol. 24, no. 6, pp. 612-6, 2004.
N. Shulzhenko, Morgun, A., and Matzinger, P., Spontaneous mutation in the Cd79b gene leads to a block in B-lymphocyte development at the C' (early pre-B) stage., Genes and immunity, vol. 10, no. 8, pp. 722-6, 2009.
N. Shulzhenko, Smirnova, A. S., Morgun, A., and Gerbase-DeLima, M., Specificity of alternative splice form detection using RT-PCR with a primer spanning the exon junction., BioTechniques, vol. 34, no. 6, pp. 1244-9, 2003.
N. Shulzhenko, Yambartsev, A., Goncalves-Primo, A., Gerbase-DeLima, M., and Morgun, A., Selection of control genes for quantitative RT-PCR based on microarray data., Biochemical and biophysical research communications, vol. 337, no. 1, pp. 306-12, 2005.
M. Gurung, Li, Z., You, H., Rodrigues, R., Jump, D. B., Morgun, A., and Shulzhenko, N., Role of gut microbiota in type 2 diabetes pathophysiology., EBioMedicine, vol. 51, p. 102590, 2020.
X. Dong, Yambartsev, A., Ramsey, S. A., Thomas, L. D., Shulzhenko, N., and Morgun, A., Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for Biologists., Bioinformatics and biology insights, vol. 9, pp. 61-74, 2015.
X. Dong, Yambartsev, A., Ramsey, S. A., Thomas, L. D., Shulzhenko, N., and Morgun, A., Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for Biologists., Bioinform Biol Insights, vol. 9, pp. 61-74, 2015.
A. Morgun, Shulzhenko, N., Unterkircher, C. S., Diniz, R. V. Z., Pereira, A. B., Silva, M. S., Nishida, S. K., Almeida, D. R., Carvalho, A. C. C., Franco, M., Souza, M. M., and Gerbase-DeLima, M., Pre- and post-transplant anti-myosin and anti-heat shock protein antibodies and cardiac transplant outcome., The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation, vol. 23, no. 2, pp. 204-9, 2004.
A. S. Smirnova, Ferreira-Silva, K. C., Mine, K. L., Andrade-Oliveira, V., Shulzhenko, N., Gerbase-DeLima, M., and Morgun, A., A novel strategy for defining haplotypes by selective depletion using restriction enzymes., Immunogenetics, vol. 59, no. 1, pp. 93-8, 2007.
V. B. Guzman, Yambartsev, A., Goncalves-Primo, A., Silva, I. D. C. G., Carvalho, C. R. N., Ribalta, J. C. L., Goulart, L. Ricardo, Shulzhenko, N., Gerbase-DeLima, M., and Morgun, A., New approach reveals CD28 and IFNG gene interaction in the susceptibility to cervical cancer., Human molecular genetics, vol. 17, no. 12, pp. 1838-44, 2008.
L. Danelishvili, Shulzhenko, N., Chinison, J. J. J., Babrak, L., Hu, J., Morgun, A., Burrows, G., and Bermudez, L. E., Mycobacterium tuberculosis Proteome Response to Antituberculosis Compounds Reveals Metabolic "Escape" Pathways That Prolong Bacterial Survival., Antimicrob Agents Chemother, vol. 61, no. 7, 2017.
N. P. Manes, Shulzhenko, N., Nuccio, A. G., Azeem, S., Morgun, A., and Nita-Lazar, A., Multi-omics Comparative Analysis Reveals Multiple Layers of Host Signaling Pathway Regulation by the Gut Microbiota., mSystems, vol. 2, no. 5, 2017.
N. Shulzhenko, Morgun, A., Rampim, G. F., Franco, M., Almeida, D. R., Diniz, R. V., Carvalho, A. C., and Gerbase-Delima, M., Monitoring of intragraft and peripheral blood TIRC7 expression as a diagnostic tool for acute cardiac rejection in humans., Human immunology, vol. 62, no. 4, pp. 342-7, 2001.
A. Morgun, Shulzhenko, N., Perez-Diez, A., Diniz, R. V. Z., Sanson, G. F., Almeida, D. R., Matzinger, P., and Gerbase-DeLima, M., Molecular profiling improves diagnoses of rejection and infection in transplanted organs., Circulation research, vol. 98, no. 12, pp. e74-83, 2006.
A. Perez-Diez, Morgun, A., and Shulzhenko, N., Microarrays for cancer diagnosis and classification., Advances in experimental medicine and biology, vol. 593, pp. 74-85, 2007.
N. Shulzhenko, Lyng, H., Sanson, G. F., and Morgun, A., Ménage à trois: an evolutionary interplay between human papillomavirus, a tumor, and a woman., Trends in microbiology, vol. 22, no. 6, pp. 345-53, 2014.
R. Greer, Dong, X., Morgun, A., and Shulzhenko, N., Investigating a holobiont: Microbiota perturbations and transkingdom networks., Gut Microbes, vol. 7, no. 2, pp. 126-35, 2016.
N. Shulzhenko, Morgun, A., Zheng, X. X., Diniz, R. V., Almeida, D. R., Ma, N., Strom, T. B., and Gerbase-Delima, M., Intragraft activation of genes encoding cytotoxic T lymphocyte effector molecules precedes the histological evidence of rejection in human cardiac transplantation., Transplantation, vol. 72, no. 10, pp. 1705-8, 2001.