Found 21 results
Author Title Type [ Year(Asc)]
Filters: Keyword is Sequence Analysis, DNA  [Clear All Filters]
2019
Z. Liu, Yao, Y., Wei, Q., Weeder, B., and Ramsey, S. A., “Res2s2aM: Deep residual network-based model for identifying functional noncoding SNPs in trait-associated regions.”, Pac Symp Biocomput, vol. 24, pp. 76-87, 2019.
2016
M. K. Muramatsu, Brothwell, J. A., Stein, B. D., Putman, T. E., Rockey, D. D., and Nelson, D. E., “Beyond Tryptophan Synthase: Identification of Genes That Contribute to Chlamydia trachomatis Survival during Gamma Interferon-Induced Persistence and Reactivation.”, Infect Immun, vol. 84, no. 10, pp. 2791-801, 2016.
2015
S. A. Budischak, Hoberg, E. P., Abrams, A., Jolles, A. E., and Ezenwa, V. O., “A combined parasitological molecular approach for noninvasive characterization of parasitic nematode communities in wild hosts.”, Mol Ecol Resour, vol. 15, no. 5, pp. 1112-9, 2015.
2014
T. A. Knijnenburg, Ramsey, S. A., Berman, B. P., Kennedy, K. A., Smit, A. F. A., Wessels, L. F. A., Laird, P. W., Aderem, A., and Shmulevich, I., “Multiscale representation of genomic signals.”, Nat Methods, vol. 11, no. 6, pp. 689-94, 2014.
2013
J. - R. Xu, Bently, J., Beck, L., Reed, A., Miller-Morgan, T. J., Heidel, J. R., Kent, M. L., Rockey, D. D., and Jin, L., “Analysis of koi herpesvirus latency in wild common carp and ornamental koi in Oregon, USA.”, J Virol Methods, vol. 187, no. 2, pp. 372-9, 2013.
T. E. Putman, Suchland, R. J., Ivanovitch, J. D., and Rockey, D. D., “Culture-independent sequence analysis of Chlamydia trachomatis in urogenital specimens identifies regions of recombination and in-patient sequence mutations.”, Microbiology (Reading), vol. 159, no. Pt 10, pp. 2109-2117, 2013.
2012
A. Cali, Kent, M. L., Sanders, J. L., Pau, C., and Takvorian, P. M., “Development, ultrastructural pathology, and taxonomic revision of the Microsporidial genus, Pseudoloma and its type species Pseudoloma neurophilia, in skeletal muscle and nervous tissue of experimentally infected zebrafish Danio rerio.”, J Eukaryot Microbiol, vol. 59, no. 1, pp. 40-8, 2012.
J. L. Sanders, Myers, M. S., Tomanek, L., Cali, A., Takvorian, P. M., and Kent, M. L., “Ichthyosporidium weissii n. sp. (Microsporidia) infecting the arrow goby (Clevelandia ios).”, J Eukaryot Microbiol, vol. 59, no. 3, pp. 258-67, 2012.
2010
B. M. Jeffrey, Suchland, R. J., Quinn, K. L., Davidson, J. R., Stamm, W. E., and Rockey, D. D., “Genome sequencing of recent clinical Chlamydia trachomatis strains identifies loci associated with tissue tropism and regions of apparent recombination.”, Infect Immun, vol. 78, no. 6, pp. 2544-53, 2010.
D. B. Burdick, Cavnor, C. C., Handcock, J., Killcoyne, S., Lin, J., Marzolf, B., Ramsey, S. A., Rovira, H., Bressler, R., Shmulevich, I., and Boyle, J., “SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments.”, BMC Bioinformatics, vol. 11, p. 377, 2010.
2008
G. D. Wiens, Rockey, D. D., Wu, Z., Chang, J., Levy, R., Crane, S., Chen, D. S., Capri, G. R., Burnett, J. R., Sudheesh, P. S., Schipma, M. J., Burd, H., Bhattacharyya, A., Rhodes, L. D., Kaul, R., and Strom, M. S., “Genome sequence of the fish pathogen Renibacterium salmoninarum suggests reductive evolution away from an environmental Arthrobacter ancestor.”, J Bacteriol, vol. 190, no. 21, pp. 6970-82, 2008.
2007
R. J. Bildfell, Whipps, C. M., Gillin, C. M., and Kent, M. L., “DNA-based identification of a hepatic trematode in an elk calf.”, J Wildl Dis, vol. 43, no. 4, pp. 762-9, 2007.
2004
M. Køie, Whipps, C. M., and Kent, M. L., “Ellipsomyxa gobii (Myxozoa: Ceratomyxidae) in the common goby Pomatoschistus microps (Teleostei: Gobiidae) uses Nereis spp. (Annelida: Polychaeta) as invertebrate hosts.”, Folia Parasitol (Praha), vol. 51, no. 1, pp. 14-8, 2004.
L. Danelishvili, Poort, M. J., and Bermudez, L. E., “Identification of Mycobacterium avium genes up-regulated in cultured macrophages and in mice.”, FEMS Microbiol Lett, vol. 239, no. 1, pp. 41-9, 2004.
C. M. Whipps, El-Matbouli, M., Hedrick, R. P., Blazer, V., and Kent, M. L., “Myxobolus cerebralis internal transcribed spacer 1 (ITS-1) sequences support recent spread of the parasite to North America and within Europe.”, Dis Aquat Organ, vol. 60, no. 2, pp. 105-8, 2004.
C. M. Whipps, Grossel, G., Adlard, R. D., Yokoyama, H., Bryant, M. S., Munday, B. L., and Kent, M. L., “Phylogeny of the multivalvulidae (Myxozoa: Myxosporea) based on comparative ribosomal DNA sequence analysis.”, J Parasitol, vol. 90, no. 3, pp. 618-22, 2004.
2002
W. Viratyosin, Campbell, L. Ann, Kuo, C. - C., and Rockey, D. D., “Intrastrain and interstrain genetic variation within a paralogous gene family in Chlamydia pneumoniae.”, BMC Microbiol, vol. 2, p. 38, 2002.
2000
S. J. Gresoviac, Khattra, J. S., Nadler, S. A., Kent, M. L., Devlin, R. H., Vivares, C. P., De La Fuente, E., and Hedrick, R. P., “Comparison of small subunit ribosomal RNA gene and internal transcribed spacer sequences among isolates of the intranuclear microsporidian Nucleospora salmonis.”, J Eukaryot Microbiol, vol. 47, no. 4, pp. 379-87, 2000.
D. D. Rockey, Lenart, J., and Stephens, R. S., “Genome sequencing and our understanding of chlamydiae.”, Infect Immun, vol. 68, no. 10, pp. 5473-9, 2000.
1998
J. P. Bannantine, Rockey, D. D., and Hackstadt, T., “Tandem genes of Chlamydia psittaci that encode proteins localized to the inclusion membrane.”, Mol Microbiol, vol. 28, no. 5, pp. 1017-26, 1998.
1995
D. D. Rockey, Heinzen, R. A., and Hackstadt, T., “Cloning and characterization of a Chlamydia psittaci gene coding for a protein localized in the inclusion membrane of infected cells.”, Mol Microbiol, vol. 15, no. 4, pp. 617-26, 1995.