Found 19 results
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S. A. Ramsey, Knijnenburg, T. A., Kennedy, K. A., Zak, D. E., Gilchrist, M., Gold, E. S., Johnson, C. D., Lampano, A. E., Litvak, V., Navarro, G., Stolyar, T., Aderem, A., and Shmulevich, I., Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites., Bioinformatics, vol. 26, no. 17, pp. 2071-5, 2010.
S. A. Ramsey, Orrell, D., and Bolouri, H., Dizzy: stochastic simulation of large-scale genetic regulatory networks (supplementary material)., J Bioinform Comput Biol, vol. 3, no. 2, pp. 437-54, 2005.
S. A. Ramsey, Ozinsky, A., Clark, A., Smith, K. D., de Atauri, P., Thorsson, V., Orrell, D., and Bolouri, H., Transcriptional noise and cellular heterogeneity in mammalian macrophages., Philos Trans R Soc Lond B Biol Sci, vol. 361, no. 1467, pp. 495-506, 2006.
S. A. Ramsey, Klemm, S. L., Zak, D. E., Kennedy, K. A., Thorsson, V., Li, B., Gilchrist, M., Gold, E. S., Johnson, C. D., Litvak, V., Navarro, G., Roach, J. C., Rosenberger, C. M., Rust, A. G., Yudkovsky, N., Aderem, A., and Shmulevich, I., Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics., PLoS Comput Biol, vol. 4, no. 3, p. e1000021, 2008.
S. A. Ramsey, Gold, E. S., and Aderem, A., A systems biology approach to understanding atherosclerosis., EMBO Mol Med, vol. 2, no. 3, pp. 79-89, 2010.
S. A. Ramsey, Orrell, D., and Bolouri, H., Dizzy: stochastic simulation of large-scale genetic regulatory networks., J Bioinform Comput Biol, vol. 3, no. 2, pp. 415-36, 2005.
A. V. Ratushny, Ramsey, S. A., and Aitchison, J. D., Mathematical modeling of biomolecular network dynamics., Methods Mol Biol, vol. 781, pp. 415-33, 2011.