Found 19 results
Author Title [ Type(Asc)] Year
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Journal Article
S. A. Ramsey, Klemm, S. L., Zak, D. E., Kennedy, K. A., Thorsson, V., Li, B., Gilchrist, M., Gold, E. S., Johnson, C. D., Litvak, V., Navarro, G., Roach, J. C., Rosenberger, C. M., Rust, A. G., Yudkovsky, N., Aderem, A., and Shmulevich, I., “Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics.”, PLoS Comput Biol, vol. 4, no. 3, p. e1000021, 2008.
S. A. Ramsey, Ozinsky, A., Clark, A., Smith, K. D., de Atauri, P., Thorsson, V., Orrell, D., and Bolouri, H., “Transcriptional noise and cellular heterogeneity in mammalian macrophages.”, Philos Trans R Soc Lond B Biol Sci, vol. 361, no. 1467, pp. 495-506, 2006.
S. A. Ramsey, Gold, E. S., and Aderem, A., “A systems biology approach to understanding atherosclerosis.”, EMBO Mol Med, vol. 2, no. 3, pp. 79-89, 2010.
T. Hackstadt, Fischer, E. R., Scidmore, M. A., Rockey, D. D., and Heinzen, R. A., “Origins and functions of the chlamydial inclusion.”, Trends Microbiol, vol. 5, no. 7, pp. 288-93, 1997.
E. E. Gorsich, Etienne, R. S., Medlock, J., Beechler, B. R., Spaan, J. M., Spaan, R. S., Ezenwa, V. O., and Jolles, A. E., “Opposite outcomes of coinfection at individual and population scales.”, Proc Natl Acad Sci U S A, vol. 115, no. 29, pp. 7545-7550, 2018.
D. F. Markle, Janik, A., Peterson, J. T., Choudhury, A., Simon, D. C., Tkach, V. V., Terwilliger, M. R., Sanders, J. L., and Kent, M. L., “Odds ratios and hurdle models: a long-term analysis of parasite infection patterns in endangered young-of-the-year suckers from Upper Klamath Lake, Oregon, USA.”, Int J Parasitol, vol. 50, no. 4, pp. 315-330, 2020.
M. E. Colvin, Peterson, J. T., Kent, M. L., and Schreck, C. B., “Occupancy modeling for improved accuracy and understanding of pathogen prevalence and dynamics.”, PLoS One, vol. 10, no. 3, p. e0116605, 2015.
A. V. Ratushny, Ramsey, S. A., and Aitchison, J. D., “Mathematical modeling of biomolecular network dynamics.”, Methods Mol Biol, vol. 781, pp. 415-33, 2011.
C. A. Manore, “Inter-epidemic and between-season persistence of rift valley fever: vertical transmission or cryptic cycling?”, Transbound Emerg Dis, vol. 62, no. 1, pp. 13-23, 2015.
A. E. Jolles, Ezenwa, V. O., Etienne, R. S., Turner, W. C., and Olff, H., “Interactions between macroparasites and microparasites drive infection patterns in free-ranging African buffalo.”, Ecology, vol. 89, no. 8, pp. 2239-50, 2008.
B. A. Han, Park, A. W., Jolles, A. E., and Altizer, S., “Infectious disease transmission and behavioural allometry in wild mammals.”, J Anim Ecol, vol. 84, no. 3, pp. 637-646, 2015.
A. E. Jolles, Etienne, R. S., and Olff, H., “Independent and competing disease risks: implications for host populations in variable environments.”, Am Nat, vol. 167, no. 5, pp. 745-57, 2006.
S. A. Ramsey, Knijnenburg, T. A., Kennedy, K. A., Zak, D. E., Gilchrist, M., Gold, E. S., Johnson, C. D., Lampano, A. E., Litvak, V., Navarro, G., Stolyar, T., Aderem, A., and Shmulevich, I., “Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites.”, Bioinformatics, vol. 26, no. 17, pp. 2071-5, 2010.
V. O. Ezenwa and Jolles, A. E., “From host immunity to pathogen invasion: the effects of helminth coinfection on the dynamics of microparasites.”, Integr Comp Biol, vol. 51, no. 4, pp. 540-51, 2011.
J. L. Johns and Christopher, M. M., “Extramedullary hematopoiesis: a new look at the underlying stem cell niche, theories of development, and occurrence in animals.”, Vet Pathol, vol. 49, no. 3, pp. 508-23, 2012.
D. M. Hawley, Etienne, R. S., Ezenwa, V. O., and Jolles, A. E., “Does animal behavior underlie covariation between hosts' exposure to infectious agents and susceptibility to infection? Implications for disease dynamics.”, Integr Comp Biol, vol. 51, no. 4, pp. 528-39, 2011.
S. A. Ramsey, Orrell, D., and Bolouri, H., “Dizzy: stochastic simulation of large-scale genetic regulatory networks (supplementary material).”, J Bioinform Comput Biol, vol. 3, no. 2, pp. 437-54, 2005.
S. A. Ramsey, Orrell, D., and Bolouri, H., “Dizzy: stochastic simulation of large-scale genetic regulatory networks.”, J Bioinform Comput Biol, vol. 3, no. 2, pp. 415-36, 2005.
T. Hackstadt, Rockey, D. D., Heinzen, R. A., and Scidmore, M. A., “Chlamydia trachomatis interrupts an exocytic pathway to acquire endogenously synthesized sphingomyelin in transit from the Golgi apparatus to the plasma membrane.”, EMBO J, vol. 15, no. 5, pp. 964-77, 1996.