Carlson College of Veterinary Medicine

A. S. Smirnova, Morgun, A., Shulzhenko, N., Silva, I. D. C. G., and Gerbase-DeLima, M., “Identification of new alternative splice events in the TCIRG1 gene in different human tissues.”, Biochemical and biophysical research communications, vol. 330, no. 3, pp. 943-9, 2005.

A. Morgun, Shulzhenko, N., Nagao, A. P., Franco, M., Souza, M. M., Almeida, D. R., Diniz, R. V., Carvalho, A. C., and Gerbase-Delima, M., “Immunoglobulin A, G, and M levels in pre- and posttransplant sera of cardiac allograft recipients.”, Transplantation proceedings, vol. 31, no. 7, pp. 2984-5, 1999.

Y. Zhang, Bobe, G., Revel, J. S., Rodrigues, R. R., Sharpton, T. J., Fantacone, M. L., Raslan, K., Miranda, C. L., Lowry, M. B., Blakemore, P. R., Morgun, A., Shulzhenko, N., Maier, C. S., Stevens, J. F., and Gombart, A. F., “Improvements in Metabolic Syndrome by Xanthohumol Derivatives Are Linked to Altered Gut Microbiota and Bile Acid Metabolism.”, Mol Nutr Food Res, vol. 64, no. 1, p. e1900789, 2020.

A. Morgun, Shulzhenko, N., Rampim, G. F., Medina, J. O. P., Machado, P. G. P., Diniz, R. V. Z., Almeida, D. R., and Gerbase-Delima, M., “Interleukin-2 gene polymorphism is associated with renal but not cardiac transplant outcome.”, Transplantation proceedings, vol. 35, no. 4, pp. 1344-5, 2003.

D. Vyshenska, Lam, K. C., Shulzhenko, N., and Morgun, A., “Interplay between viruses and bacterial microbiota in cancer development.”, Semin Immunol, vol. 32, pp. 14-24, 2017.

N. Shulzhenko, Morgun, A., Zheng, X. X., Diniz, R. V., Almeida, D. R., Ma, N., Strom, T. B., and Gerbase-Delima, M., “Intragraft activation of genes encoding cytotoxic T lymphocyte effector molecules precedes the histological evidence of rejection in human cardiac transplantation.”, Transplantation, vol. 72, no. 10, pp. 1705-8, 2001.

R. Greer, Dong, X., Morgun, A., and Shulzhenko, N., “Investigating a holobiont: Microbiota perturbations and transkingdom networks.”, Gut Microbes, vol. 7, no. 2, pp. 126-35, 2016.

N. Shulzhenko, Lyng, H., Sanson, G. F., and Morgun, A., “Ménage à trois: an evolutionary interplay between human papillomavirus, a tumor, and a woman.”, Trends in microbiology, vol. 22, no. 6, pp. 345-53, 2014.

A. Perez-Diez, Morgun, A., and Shulzhenko, N., “Microarrays for cancer diagnosis and classification.”, Advances in experimental medicine and biology, vol. 593, pp. 74-85, 2007.

A. Morgun, Shulzhenko, N., Perez-Diez, A., Diniz, R. V. Z., Sanson, G. F., Almeida, D. R., Matzinger, P., and Gerbase-DeLima, M., “Molecular profiling improves diagnoses of rejection and infection in transplanted organs.”, Circulation research, vol. 98, no. 12, pp. e74-83, 2006.

N. Shulzhenko, Morgun, A., Rampim, G. F., Franco, M., Almeida, D. R., Diniz, R. V., Carvalho, A. C., and Gerbase-Delima, M., “Monitoring of intragraft and peripheral blood TIRC7 expression as a diagnostic tool for acute cardiac rejection in humans.”, Human immunology, vol. 62, no. 4, pp. 342-7, 2001.

N. P. Manes, Shulzhenko, N., Nuccio, A. G., Azeem, S., Morgun, A., and Nita-Lazar, A., “Multi-omics Comparative Analysis Reveals Multiple Layers of Host Signaling Pathway Regulation by the Gut Microbiota.”, mSystems, vol. 2, no. 5, 2017.

L. Danelishvili, Shulzhenko, N., Chinison, J. J. J., Babrak, L., Hu, J., Morgun, A., Burrows, G., and Bermudez, L. E., “Mycobacterium tuberculosis Proteome Response to Antituberculosis Compounds Reveals Metabolic "Escape" Pathways That Prolong Bacterial Survival.”, Antimicrob Agents Chemother, vol. 61, no. 7, 2017.

V. B. Guzman, Yambartsev, A., Goncalves-Primo, A., Silva, I. D. C. G., Carvalho, C. R. N., Ribalta, J. C. L., Goulart, L. Ricardo, Shulzhenko, N., Gerbase-DeLima, M., and Morgun, A., “New approach reveals CD28 and IFNG gene interaction in the susceptibility to cervical cancer.”, Human molecular genetics, vol. 17, no. 12, pp. 1838-44, 2008.

A. S. Smirnova, Ferreira-Silva, K. C., Mine, K. L., Andrade-Oliveira, V., Shulzhenko, N., Gerbase-DeLima, M., and Morgun, A., “A novel strategy for defining haplotypes by selective depletion using restriction enzymes.”, Immunogenetics, vol. 59, no. 1, pp. 93-8, 2007.

A. Morgun, Shulzhenko, N., Unterkircher, C. S., Diniz, R. V. Z., Pereira, A. B., Silva, M. S., Nishida, S. K., Almeida, D. R., Carvalho, A. C. C., Franco, M., Souza, M. M., and Gerbase-DeLima, M., “Pre- and post-transplant anti-myosin and anti-heat shock protein antibodies and cardiac transplant outcome.”, The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation, vol. 23, no. 2, pp. 204-9, 2004.

X. Dong, Yambartsev, A., Ramsey, S. A., Thomas, L. D., Shulzhenko, N., and Morgun, A., “Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for Biologists.”, Bioinformatics and biology insights, vol. 9, pp. 61-74, 2015.

X. Dong, Yambartsev, A., Ramsey, S. A., Thomas, L. D., Shulzhenko, N., and Morgun, A., “Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for Biologists.”, Bioinform Biol Insights, vol. 9, pp. 61-74, 2015.

M. Gurung, Li, Z., You, H., Rodrigues, R., Jump, D. B., Morgun, A., and Shulzhenko, N., “Role of gut microbiota in type 2 diabetes pathophysiology.”, EBioMedicine, vol. 51, p. 102590, 2020.

N. Shulzhenko, Yambartsev, A., Goncalves-Primo, A., Gerbase-DeLima, M., and Morgun, A., “Selection of control genes for quantitative RT-PCR based on microarray data.”, Biochemical and biophysical research communications, vol. 337, no. 1, pp. 306-12, 2005.

N. Shulzhenko, Smirnova, A. S., Morgun, A., and Gerbase-DeLima, M., “Specificity of alternative splice form detection using RT-PCR with a primer spanning the exon junction.”, BioTechniques, vol. 34, no. 6, pp. 1244-9, 2003.

N. Shulzhenko, Morgun, A., and Matzinger, P., “Spontaneous mutation in the Cd79b gene leads to a block in B-lymphocyte development at the C' (early pre-B) stage.”, Genes and immunity, vol. 10, no. 8, pp. 722-6, 2009.

A. Morgun, Shulzhenko, N., Socorro-Silva, A., Diniz, R. V. Z., Almeida, D. R., and Gerbase-DeLima, M., “T cell receptor excision circles (TRECs) in relation to acute cardiac allograft rejection.”, Journal of clinical immunology, vol. 24, no. 6, pp. 612-6, 2004.

A. L. Johnson, Aravind, L., Shulzhenko, N., Morgun, A., Choi, S. - Y., Crockford, T. L., Lambe, T., Domaschenz, H., Kucharska, E. M., Zheng, L., Vinuesa, C. G., Lenardo, M. J., Goodnow, C. C., Cornall, R. J., and Schwartz, R. H., “Themis is a member of a new metazoan gene family and is required for the completion of thymocyte positive selection.”, Nature immunology, vol. 10, no. 8, pp. 831-9, 2009.

S. N. Diniz, Pendeloski, K. P. T., Morgun, A., Chepelev, I., Gerbase-DeLima, M., and Shulzhenko, N., “Tissue-specific expression of IL-15RA alternative splicing transcripts and its regulation by DNA methylation.”, European cytokine network, vol. 21, no. 4, pp. 308-18, 2010.