Carlson College of Veterinary Medicine

N. Shulzhenko, Morgun, A., and Matzinger, P., “Spontaneous mutation in the Cd79b gene leads to a block in B-lymphocyte development at the C' (early pre-B) stage.”, Genes and immunity, vol. 10, no. 8, pp. 722-6, 2009.

A. L. Johnson, Aravind, L., Shulzhenko, N., Morgun, A., Choi, S. - Y., Crockford, T. L., Lambe, T., Domaschenz, H., Kucharska, E. M., Zheng, L., Vinuesa, C. G., Lenardo, M. J., Goodnow, C. C., Cornall, R. J., and Schwartz, R. H., “Themis is a member of a new metazoan gene family and is required for the completion of thymocyte positive selection.”, Nature immunology, vol. 10, no. 8, pp. 831-9, 2009.

S. N. Diniz, Pendeloski, K. P. T., Morgun, A., Chepelev, I., Gerbase-DeLima, M., and Shulzhenko, N., “Tissue-specific expression of IL-15RA alternative splicing transcripts and its regulation by DNA methylation.”, European cytokine network, vol. 21, no. 4, pp. 308-18, 2010.

N. Shulzhenko, Morgun, A., Hsiao, W., Battle, M., Yao, M., Gavrilova, O., Orandle, M., Mayer, L., Macpherson, A. J., McCoy, K. D., Fraser-Liggett, C., and Matzinger, P., “Crosstalk between B lymphocytes, microbiota and the intestinal epithelium governs immunity versus metabolism in the gut.”, Nature medicine, vol. 17, no. 12, pp. 1585-93, 2011.

R. L. Greer, Morgun, A., and Shulzhenko, N., “Bridging immunity and lipid metabolism by gut microbiota.”, The Journal of allergy and clinical immunology, vol. 132, no. 2, pp. 253-62, 2013.

K. L. Mine, Shulzhenko, N., Yambartsev, A., Rochman, M., Sanson, G. F. O., Lando, M., Varma, S., Skinner, J., Volfovsky, N., Deng, T., Brenna, S. M. F., Carvalho, C. R. N., Ribalta, J. C. L., Bustin, M., Matzinger, P., Silva, I. D. C. G., Lyng, H., Gerbase-DeLima, M., and Morgun, A., “Gene network reconstruction reveals cell cycle and antiviral genes as major drivers of cervical cancer.”, Nature communications, vol. 4, p. 1806, 2013.

N. Shulzhenko, Lyng, H., Sanson, G. F., and Morgun, A., “Ménage à trois: an evolutionary interplay between human papillomavirus, a tumor, and a woman.”, Trends in microbiology, vol. 22, no. 6, pp. 345-53, 2014.

X. Dong, Yambartsev, A., Ramsey, S. A., Thomas, L. D., Shulzhenko, N., and Morgun, A., “Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for Biologists.”, Bioinform Biol Insights, vol. 9, pp. 61-74, 2015.

X. Dong, Yambartsev, A., Ramsey, S. A., Thomas, L. D., Shulzhenko, N., and Morgun, A., “Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for Biologists.”, Bioinformatics and biology insights, vol. 9, pp. 61-74, 2015.

A. Morgun, Dzutsev, A., Dong, X., Greer, R. L., D Sexton, J., Ravel, J., Schuster, M., Hsiao, W., Matzinger, P., and Shulzhenko, N., “Uncovering effects of antibiotics on the host and microbiota using transkingdom gene networks.”, Gut, vol. 64, no. 11, pp. 1732-43, 2015.

R. L. Greer, Dong, X., Moraes, A. Carolina F., Zielke, R. A., Fernandes, G. R., Peremyslova, E., Vasquez-Perez, S., Schoenborn, A. A., Gomes, E. P., Pereira, A. C., Ferreira, S. R. G., Yao, M., Fuss, I. J., Strober, W., Sikora, A. E., Taylor, G. A., Gulati, A. S., Morgun, A., and Shulzhenko, N., “Akkermansia muciniphila mediates negative effects of IFNγ on glucose metabolism.”, Nat Commun, vol. 7, p. 13329, 2016.

L. D. Thomas, Vyshenska, D., Shulzhenko, N., Yambartsev, A., and Morgun, A., “Differentially correlated genes in co-expression networks control phenotype transitions.”, F1000Res, vol. 5, p. 2740, 2016.

R. Greer, Dong, X., Morgun, A., and Shulzhenko, N., “Investigating a holobiont: Microbiota perturbations and transkingdom networks.”, Gut Microbes, vol. 7, no. 2, pp. 126-35, 2016.

A. Yambartsev, Perlin, M. A., Kovchegov, Y., Shulzhenko, N., Mine, K. L., Dong, X., and Morgun, A., “Unexpected links reflect the noise in networks.”, Biol Direct, vol. 11, no. 1, p. 52, 2016.

R. R. Rodrigues, Greer, R. L., Dong, X., DSouza, K. N., Gurung, M., Wu, J. Y., Morgun, A., and Shulzhenko, N., “Antibiotic-Induced Alterations in Gut Microbiota Are Associated with Changes in Glucose Metabolism in Healthy Mice.”, Front Microbiol, vol. 8, p. 2306, 2017.

X. Dong, Shulzhenko, N., Lemaitre, J., Greer, R. L., Peremyslova, K., Quamruzzaman, Q., Rahman, M., Ibn Hasan, O. Sharif, Joya, S. Afroz, Golam, M., Christiani, D. C., Morgun, A., and Kile, M. L., “Arsenic exposure and intestinal microbiota in children from Sirajdikhan, Bangladesh.”, PLoS One, vol. 12, no. 12, p. e0188487, 2017.

D. Vyshenska, Lam, K. C., Shulzhenko, N., and Morgun, A., “Interplay between viruses and bacterial microbiota in cancer development.”, Semin Immunol, vol. 32, pp. 14-24, 2017.

N. P. Manes, Shulzhenko, N., Nuccio, A. G., Azeem, S., Morgun, A., and Nita-Lazar, A., “Multi-omics Comparative Analysis Reveals Multiple Layers of Host Signaling Pathway Regulation by the Gut Microbiota.”, mSystems, vol. 2, no. 5, 2017.

L. Danelishvili, Shulzhenko, N., Chinison, J. J. J., Babrak, L., Hu, J., Morgun, A., Burrows, G., and Bermudez, L. E., “Mycobacterium tuberculosis Proteome Response to Antituberculosis Compounds Reveals Metabolic "Escape" Pathways That Prolong Bacterial Survival.”, Antimicrob Agents Chemother, vol. 61, no. 7, 2017.

M. Bodogai, O'Connell, J., Kim, K., Kim, Y., Moritoh, K., Chen, C., Gusev, F., Vaughan, K., Shulzhenko, N., Mattison, J. A., Lee-Chang, C., Chen, W., Carlson, O., Becker, K. G., Gurung, M., Morgun, A., White, J., Meade, T., Perdue, K., Mack, M., Ferrucci, L., Trinchieri, G., de Cabo, R., Rogaev, E., Egan, J., Wu, J., and Biragyn, A., “Commensal bacteria contribute to insulin resistance in aging by activating innate B1a cells.”, Sci Transl Med, vol. 10, no. 467, 2018.

N. Shulzhenko, Dong, X., Vyshenska, D., Greer, R. L., Gurung, M., Vasquez-Perez, S., Peremyslova, E., Sosnovtsev, S., Quezado, M., Yao, M., Montgomery-Recht, K., Strober, W., Fuss, I. J., and Morgun, A., “CVID enteropathy is characterized by exceeding low mucosal IgA levels and interferon-driven inflammation possibly related to the presence of a pathobiont.”, Clin Immunol, vol. 197, pp. 139-153, 2018.

K. Chi Lam, Vyshenska, D., Hu, J., Rodrigues, R. Rosario, Nilsen, A., Zielke, R. A., Brown, N. Samuel, Aarnes, E. - K., Sikora, A. E., Shulzhenko, N., Lyng, H., and Morgun, A., “Transkingdom network reveals bacterial players associated with cervical cancer gene expression program.”, PeerJ, vol. 6, p. e5590, 2018.

R. R. Rodrigues, Shulzhenko, N., and Morgun, A., “Transkingdom Networks: A Systems Biology Approach to Identify Causal Members of Host-Microbiota Interactions.”, Methods Mol Biol, vol. 1849, pp. 227-242, 2018.

K. E. Lawrence, Lam, K. C., Morgun, A., Shulzhenko, N., and Löhr, C. V., “Effect of temperature and time on the thanatomicrobiome of the cecum, ileum, kidney, and lung of domestic rabbits.”, J Vet Diagn Invest, vol. 31, no. 2, pp. 155-163, 2019.

H. M. Kahalehili, Newman, N. K., Pennington, J. M., Kolluri, S. K., Kerkvliet, N. I., Shulzhenko, N., Morgun, A., and Ehrlich, A. K., “Dietary Indole-3-Carbinol Activates AhR in the Gut, Alters Th17-Microbe Interactions, and Exacerbates Insulitis in NOD Mice.”, Front Immunol, vol. 11, p. 606441, 2020.