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Home
Publications
Found 55 results
Author
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Type
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Natalia Shulzhenko
[Clear All Filters]
2009
N. Shulzhenko
,
Morgun, A.
, and
Matzinger, P.
,
“
Spontaneous mutation in the Cd79b gene leads to a block in B-lymphocyte development at the C' (early pre-B) stage.
”
,
Genes and immunity
, vol. 10, no. 8, pp. 722-6, 2009.
A. L. Johnson
,
Aravind, L.
,
Shulzhenko, N.
,
Morgun, A.
,
Choi, S. - Y.
,
Crockford, T. L.
,
Lambe, T.
,
Domaschenz, H.
,
Kucharska, E. M.
,
Zheng, L.
,
Vinuesa, C. G.
,
Lenardo, M. J.
,
Goodnow, C. C.
,
Cornall, R. J.
, and
Schwartz, R. H.
,
“
Themis is a member of a new metazoan gene family and is required for the completion of thymocyte positive selection.
”
,
Nature immunology
, vol. 10, no. 8, pp. 831-9, 2009.
2010
S. N. Diniz
,
Pendeloski, K. P. T.
,
Morgun, A.
,
Chepelev, I.
,
Gerbase-DeLima, M.
, and
Shulzhenko, N.
,
“
Tissue-specific expression of IL-15RA alternative splicing transcripts and its regulation by DNA methylation.
”
,
European cytokine network
, vol. 21, no. 4, pp. 308-18, 2010.
2011
N. Shulzhenko
,
Morgun, A.
,
Hsiao, W.
,
Battle, M.
,
Yao, M.
,
Gavrilova, O.
,
Orandle, M.
,
Mayer, L.
,
Macpherson, A. J.
,
McCoy, K. D.
,
Fraser-Liggett, C.
, and
Matzinger, P.
,
“
Crosstalk between B lymphocytes, microbiota and the intestinal epithelium governs immunity versus metabolism in the gut.
”
,
Nature medicine
, vol. 17, no. 12, pp. 1585-93, 2011.
2013
R. L. Greer
,
Morgun, A.
, and
Shulzhenko, N.
,
“
Bridging immunity and lipid metabolism by gut microbiota.
”
,
The Journal of allergy and clinical immunology
, vol. 132, no. 2, pp. 253-62, 2013.
K. L. Mine
,
Shulzhenko, N.
,
Yambartsev, A.
,
Rochman, M.
,
Sanson, G. F. O.
,
Lando, M.
,
Varma, S.
,
Skinner, J.
,
Volfovsky, N.
,
Deng, T.
,
Brenna, S. M. F.
,
Carvalho, C. R. N.
,
Ribalta, J. C. L.
,
Bustin, M.
,
Matzinger, P.
,
Silva, I. D. C. G.
,
Lyng, H.
,
Gerbase-DeLima, M.
, and
Morgun, A.
,
“
Gene network reconstruction reveals cell cycle and antiviral genes as major drivers of cervical cancer.
”
,
Nature communications
, vol. 4, p. 1806, 2013.
2014
N. Shulzhenko
,
Lyng, H.
,
Sanson, G. F.
, and
Morgun, A.
,
“
Ménage à trois: an evolutionary interplay between human papillomavirus, a tumor, and a woman.
”
,
Trends in microbiology
, vol. 22, no. 6, pp. 345-53, 2014.
2015
X. Dong
,
Yambartsev, A.
,
Ramsey, S. A.
,
Thomas, L. D.
,
Shulzhenko, N.
, and
Morgun, A.
,
“
Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for Biologists.
”
,
Bioinform Biol Insights
, vol. 9, pp. 61-74, 2015.
X. Dong
,
Yambartsev, A.
,
Ramsey, S. A.
,
Thomas, L. D.
,
Shulzhenko, N.
, and
Morgun, A.
,
“
Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for Biologists.
”
,
Bioinformatics and biology insights
, vol. 9, pp. 61-74, 2015.
A. Morgun
,
Dzutsev, A.
,
Dong, X.
,
Greer, R. L.
,
D Sexton, J.
,
Ravel, J.
,
Schuster, M.
,
Hsiao, W.
,
Matzinger, P.
, and
Shulzhenko, N.
,
“
Uncovering effects of antibiotics on the host and microbiota using transkingdom gene networks.
”
,
Gut
, vol. 64, no. 11, pp. 1732-43, 2015.
2016
R. L. Greer
,
Dong, X.
,
Moraes, A. Carolina F.
,
Zielke, R. A.
,
Fernandes, G. R.
,
Peremyslova, E.
,
Vasquez-Perez, S.
,
Schoenborn, A. A.
,
Gomes, E. P.
,
Pereira, A. C.
,
Ferreira, S. R. G.
,
Yao, M.
,
Fuss, I. J.
,
Strober, W.
,
Sikora, A. E.
,
Taylor, G. A.
,
Gulati, A. S.
,
Morgun, A.
, and
Shulzhenko, N.
,
“
Akkermansia muciniphila mediates negative effects of IFNγ on glucose metabolism.
”
,
Nat Commun
, vol. 7, p. 13329, 2016.
L. D. Thomas
,
Vyshenska, D.
,
Shulzhenko, N.
,
Yambartsev, A.
, and
Morgun, A.
,
“
Differentially correlated genes in co-expression networks control phenotype transitions.
”
,
F1000Res
, vol. 5, p. 2740, 2016.
R. Greer
,
Dong, X.
,
Morgun, A.
, and
Shulzhenko, N.
,
“
Investigating a holobiont: Microbiota perturbations and transkingdom networks.
”
,
Gut Microbes
, vol. 7, no. 2, pp. 126-35, 2016.
A. Yambartsev
,
Perlin, M. A.
,
Kovchegov, Y.
,
Shulzhenko, N.
,
Mine, K. L.
,
Dong, X.
, and
Morgun, A.
,
“
Unexpected links reflect the noise in networks.
”
,
Biol Direct
, vol. 11, no. 1, p. 52, 2016.
2017
R. R. Rodrigues
,
Greer, R. L.
,
Dong, X.
,
DSouza, K. N.
,
Gurung, M.
,
Wu, J. Y.
,
Morgun, A.
, and
Shulzhenko, N.
,
“
Antibiotic-Induced Alterations in Gut Microbiota Are Associated with Changes in Glucose Metabolism in Healthy Mice.
”
,
Front Microbiol
, vol. 8, p. 2306, 2017.
X. Dong
,
Shulzhenko, N.
,
Lemaitre, J.
,
Greer, R. L.
,
Peremyslova, K.
,
Quamruzzaman, Q.
,
Rahman, M.
,
Ibn Hasan, O. Sharif
,
Joya, S. Afroz
,
Golam, M.
,
Christiani, D. C.
,
Morgun, A.
, and
Kile, M. L.
,
“
Arsenic exposure and intestinal microbiota in children from Sirajdikhan, Bangladesh.
”
,
PLoS One
, vol. 12, no. 12, p. e0188487, 2017.
D. Vyshenska
,
Lam, K. C.
,
Shulzhenko, N.
, and
Morgun, A.
,
“
Interplay between viruses and bacterial microbiota in cancer development.
”
,
Semin Immunol
, vol. 32, pp. 14-24, 2017.
N. P. Manes
,
Shulzhenko, N.
,
Nuccio, A. G.
,
Azeem, S.
,
Morgun, A.
, and
Nita-Lazar, A.
,
“
Multi-omics Comparative Analysis Reveals Multiple Layers of Host Signaling Pathway Regulation by the Gut Microbiota.
”
,
mSystems
, vol. 2, no. 5, 2017.
L. Danelishvili
,
Shulzhenko, N.
,
Chinison, J. J. J.
,
Babrak, L.
,
Hu, J.
,
Morgun, A.
,
Burrows, G.
, and
Bermudez, L. E.
,
“
Mycobacterium tuberculosis Proteome Response to Antituberculosis Compounds Reveals Metabolic "Escape" Pathways That Prolong Bacterial Survival.
”
,
Antimicrob Agents Chemother
, vol. 61, no. 7, 2017.
2018
M. Bodogai
,
O'Connell, J.
,
Kim, K.
,
Kim, Y.
,
Moritoh, K.
,
Chen, C.
,
Gusev, F.
,
Vaughan, K.
,
Shulzhenko, N.
,
Mattison, J. A.
,
Lee-Chang, C.
,
Chen, W.
,
Carlson, O.
,
Becker, K. G.
,
Gurung, M.
,
Morgun, A.
,
White, J.
,
Meade, T.
,
Perdue, K.
,
Mack, M.
,
Ferrucci, L.
,
Trinchieri, G.
,
de Cabo, R.
,
Rogaev, E.
,
Egan, J.
,
Wu, J.
, and
Biragyn, A.
,
“
Commensal bacteria contribute to insulin resistance in aging by activating innate B1a cells.
”
,
Sci Transl Med
, vol. 10, no. 467, 2018.
N. Shulzhenko
,
Dong, X.
,
Vyshenska, D.
,
Greer, R. L.
,
Gurung, M.
,
Vasquez-Perez, S.
,
Peremyslova, E.
,
Sosnovtsev, S.
,
Quezado, M.
,
Yao, M.
,
Montgomery-Recht, K.
,
Strober, W.
,
Fuss, I. J.
, and
Morgun, A.
,
“
CVID enteropathy is characterized by exceeding low mucosal IgA levels and interferon-driven inflammation possibly related to the presence of a pathobiont.
”
,
Clin Immunol
, vol. 197, pp. 139-153, 2018.
K. Chi Lam
,
Vyshenska, D.
,
Hu, J.
,
Rodrigues, R. Rosario
,
Nilsen, A.
,
Zielke, R. A.
,
Brown, N. Samuel
,
Aarnes, E. - K.
,
Sikora, A. E.
,
Shulzhenko, N.
,
Lyng, H.
, and
Morgun, A.
,
“
Transkingdom network reveals bacterial players associated with cervical cancer gene expression program.
”
,
PeerJ
, vol. 6, p. e5590, 2018.
R. R. Rodrigues
,
Shulzhenko, N.
, and
Morgun, A.
,
“
Transkingdom Networks: A Systems Biology Approach to Identify Causal Members of Host-Microbiota Interactions.
”
,
Methods Mol Biol
, vol. 1849, pp. 227-242, 2018.
2019
K. E. Lawrence
,
Lam, K. C.
,
Morgun, A.
,
Shulzhenko, N.
, and
Löhr, C. V.
,
“
Effect of temperature and time on the thanatomicrobiome of the cecum, ileum, kidney, and lung of domestic rabbits.
”
,
J Vet Diagn Invest
, vol. 31, no. 2, pp. 155-163, 2019.
2020
H. M. Kahalehili
,
Newman, N. K.
,
Pennington, J. M.
,
Kolluri, S. K.
,
Kerkvliet, N. I.
,
Shulzhenko, N.
,
Morgun, A.
, and
Ehrlich, A. K.
,
“
Dietary Indole-3-Carbinol Activates AhR in the Gut, Alters Th17-Microbe Interactions, and Exacerbates Insulitis in NOD Mice.
”
,
Front Immunol
, vol. 11, p. 606441, 2020.
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