Found 5 results
Author Title [ Type(Desc)] Year
Filters: Author is Kennedy, Kathleen A  [Clear All Filters]
Journal Article
V. Litvak, Ramsey, S. A., Rust, A. G., Zak, D. E., Kennedy, K. A., Lampano, A. E., Nykter, M., Shmulevich, I., and Aderem, A., Function of C/EBPdelta in a regulatory circuit that discriminates between transient and persistent TLR4-induced signals., Nat Immunol, vol. 10, no. 4, pp. 437-43, 2009.
S. A. Ramsey, Knijnenburg, T. A., Kennedy, K. A., Zak, D. E., Gilchrist, M., Gold, E. S., Johnson, C. D., Lampano, A. E., Litvak, V., Navarro, G., Stolyar, T., Aderem, A., and Shmulevich, I., Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites., Bioinformatics, vol. 26, no. 17, pp. 2071-5, 2010.
P. S. Askovich, Ramsey, S. A., Diercks, A. H., Kennedy, K. A., Knijnenburg, T. A., and Aderem, A., Identifying novel transcription factors involved in the inflammatory response by using binding site motif scanning in genomic regions defined by histone acetylation., PLoS One, vol. 12, no. 9, p. e0184850, 2017.
T. A. Knijnenburg, Ramsey, S. A., Berman, B. P., Kennedy, K. A., Smit, A. F. A., Wessels, L. F. A., Laird, P. W., Aderem, A., and Shmulevich, I., Multiscale representation of genomic signals., Nat Methods, vol. 11, no. 6, pp. 689-94, 2014.
S. A. Ramsey, Klemm, S. L., Zak, D. E., Kennedy, K. A., Thorsson, V., Li, B., Gilchrist, M., Gold, E. S., Johnson, C. D., Litvak, V., Navarro, G., Roach, J. C., Rosenberger, C. M., Rust, A. G., Yudkovsky, N., Aderem, A., and Shmulevich, I., Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics., PLoS Comput Biol, vol. 4, no. 3, p. e1000021, 2008.