Carlson College of Veterinary Medicine

A. Yambartsev, Perlin, M. A., Kovchegov, Y., Shulzhenko, N., Mine, K. L., Dong, X., and Morgun, A., “Unexpected links reflect the noise in networks.”, Biol Direct, vol. 11, no. 1, p. 52, 2016.

A. Morgun, Dzutsev, A., Dong, X., Greer, R. L., D Sexton, J., Ravel, J., Schuster, M., Hsiao, W., Matzinger, P., and Shulzhenko, N., “Uncovering effects of antibiotics on the host and microbiota using transkingdom gene networks.”, Gut, vol. 64, no. 11, pp. 1732-43, 2015.

R. R. Rodrigues, Shulzhenko, N., and Morgun, A., “Transkingdom Networks: A Systems Biology Approach to Identify Causal Members of Host-Microbiota Interactions.”, Methods Mol Biol, vol. 1849, pp. 227-242, 2018.

K. Chi Lam, Vyshenska, D., Hu, J., Rodrigues, R. Rosario, Nilsen, A., Zielke, R. A., Brown, N. Samuel, Aarnes, E. - K., Sikora, A. E., Shulzhenko, N., Lyng, H., and Morgun, A., “Transkingdom network reveals bacterial players associated with cervical cancer gene expression program.”, PeerJ, vol. 6, p. e5590, 2018.

R. R. Rodrigues, Gurung, M., Li, Z., Garcia-Jaramillo, M., Greer, R., Gaulke, C., Bauchinger, F., You, H., Pederson, J. W., Vasquez-Perez, S., White, K. D., Frink, B., Philmus, B., Jump, D. B., Trinchieri, G., Berry, D., Sharpton, T. J., Dzutsev, A., Morgun, A., and Shulzhenko, N., “Transkingdom interactions between Lactobacilli and hepatic mitochondria attenuate western diet-induced diabetes.”, Nat Commun, vol. 12, no. 1, p. 101, 2021.

S. N. Diniz, Pendeloski, K. P. T., Morgun, A., Chepelev, I., Gerbase-DeLima, M., and Shulzhenko, N., “Tissue-specific expression of IL-15RA alternative splicing transcripts and its regulation by DNA methylation.”, European cytokine network, vol. 21, no. 4, pp. 308-18, 2010.

A. Morgun, Shulzhenko, N., Socorro-Silva, A., Diniz, R. V. Z., Almeida, D. R., and Gerbase-DeLima, M., “T cell receptor excision circles (TRECs) in relation to acute cardiac allograft rejection.”, Journal of clinical immunology, vol. 24, no. 6, pp. 612-6, 2004.

N. Shulzhenko, Smirnova, A. S., Morgun, A., and Gerbase-DeLima, M., “Specificity of alternative splice form detection using RT-PCR with a primer spanning the exon junction.”, BioTechniques, vol. 34, no. 6, pp. 1244-9, 2003.

N. Shulzhenko, Yambartsev, A., Goncalves-Primo, A., Gerbase-DeLima, M., and Morgun, A., “Selection of control genes for quantitative RT-PCR based on microarray data.”, Biochemical and biophysical research communications, vol. 337, no. 1, pp. 306-12, 2005.

M. Gurung, Li, Z., You, H., Rodrigues, R., Jump, D. B., Morgun, A., and Shulzhenko, N., “Role of gut microbiota in type 2 diabetes pathophysiology.”, EBioMedicine, vol. 51, p. 102590, 2020.

X. Dong, Yambartsev, A., Ramsey, S. A., Thomas, L. D., Shulzhenko, N., and Morgun, A., “Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for Biologists.”, Bioinformatics and biology insights, vol. 9, pp. 61-74, 2015.

X. Dong, Yambartsev, A., Ramsey, S. A., Thomas, L. D., Shulzhenko, N., and Morgun, A., “Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for Biologists.”, Bioinform Biol Insights, vol. 9, pp. 61-74, 2015.

A. Morgun, Shulzhenko, N., Unterkircher, C. S., Diniz, R. V. Z., Pereira, A. B., Silva, M. S., Nishida, S. K., Almeida, D. R., Carvalho, A. C. C., Franco, M., Souza, M. M., and Gerbase-DeLima, M., “Pre- and post-transplant anti-myosin and anti-heat shock protein antibodies and cardiac transplant outcome.”, The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation, vol. 23, no. 2, pp. 204-9, 2004.

A. S. Smirnova, Ferreira-Silva, K. C., Mine, K. L., Andrade-Oliveira, V., Shulzhenko, N., Gerbase-DeLima, M., and Morgun, A., “A novel strategy for defining haplotypes by selective depletion using restriction enzymes.”, Immunogenetics, vol. 59, no. 1, pp. 93-8, 2007.

V. B. Guzman, Yambartsev, A., Goncalves-Primo, A., Silva, I. D. C. G., Carvalho, C. R. N., Ribalta, J. C. L., Goulart, L. Ricardo, Shulzhenko, N., Gerbase-DeLima, M., and Morgun, A., “New approach reveals CD28 and IFNG gene interaction in the susceptibility to cervical cancer.”, Human molecular genetics, vol. 17, no. 12, pp. 1838-44, 2008.

N. P. Manes, Shulzhenko, N., Nuccio, A. G., Azeem, S., Morgun, A., and Nita-Lazar, A., “Multi-omics Comparative Analysis Reveals Multiple Layers of Host Signaling Pathway Regulation by the Gut Microbiota.”, mSystems, vol. 2, no. 5, 2017.

A. Morgun, Shulzhenko, N., Perez-Diez, A., Diniz, R. V. Z., Sanson, G. F., Almeida, D. R., Matzinger, P., and Gerbase-DeLima, M., “Molecular profiling improves diagnoses of rejection and infection in transplanted organs.”, Circulation research, vol. 98, no. 12, pp. e74-83, 2006.

A. Perez-Diez, Morgun, A., and Shulzhenko, N., “Microarrays for cancer diagnosis and classification.”, Advances in experimental medicine and biology, vol. 593, pp. 74-85, 2007.

N. Shulzhenko, Lyng, H., Sanson, G. F., and Morgun, A., “Ménage à trois: an evolutionary interplay between human papillomavirus, a tumor, and a woman.”, Trends in microbiology, vol. 22, no. 6, pp. 345-53, 2014.

R. Greer, Dong, X., Morgun, A., and Shulzhenko, N., “Investigating a holobiont: Microbiota perturbations and transkingdom networks.”, Gut Microbes, vol. 7, no. 2, pp. 126-35, 2016.

D. Vyshenska, Lam, K. C., Shulzhenko, N., and Morgun, A., “Interplay between viruses and bacterial microbiota in cancer development.”, Semin Immunol, vol. 32, pp. 14-24, 2017.

Y. Zhang, Bobe, G., Revel, J. S., Rodrigues, R. R., Sharpton, T. J., Fantacone, M. L., Raslan, K., Miranda, C. L., Lowry, M. B., Blakemore, P. R., Morgun, A., Shulzhenko, N., Maier, C. S., Stevens, J. F., and Gombart, A. F., “Improvements in Metabolic Syndrome by Xanthohumol Derivatives Are Linked to Altered Gut Microbiota and Bile Acid Metabolism.”, Mol Nutr Food Res, vol. 64, no. 1, p. e1900789, 2020.

A. S. Smirnova, Morgun, A., Shulzhenko, N., Silva, I. D. C. G., and Gerbase-DeLima, M., “Identification of new alternative splice events in the TCIRG1 gene in different human tissues.”, Biochemical and biophysical research communications, vol. 330, no. 3, pp. 943-9, 2005.

D. Miranda Borducchi, Gerbase-DeLima, M., Morgun, A., Shulzhenko, N., Pombo-de-Oliveira, M. S., Kerbauy, J., and de Oliveira, J. Salvador R., “Human leucocyte antigen and human T-cell lymphotropic virus type 1 associated diseases in Brazil.”, British journal of haematology, vol. 123, no. 5, pp. 954-5, 2003.

S. Jamil Hada Monte, Neto, J. Machado Mo, Rampim, G. Fabianne, Shulzhenko, N., Morgun, A., and Gerbase-DeLima, M., “[HLA polymorphism in a racially admixed sample of the population of Teresina, Piauí].”, Revista da Associação Médica Brasileira (1992), vol. 50, no. 4, pp. 422-6, 2004.